Publications and Presentations - Grant Activity - Other Publications - Book Reviews
Publications and Presentations: - top
- C. Lawson and M. Pauley, "Development of an Image Analysis Tool Using Python," An oral presentation at the Nebraska Academy of Sciences Meeting, Lincoln, NE, April 2007.
- D. Recek and M. Pauley, "Web-based Alignment Matrix Creation Tool," An oral presentation at the Nebraska Academy of Sciences Meeting, Lincoln, NE, April 2007.
- F. Duan, M. Pauley and R. Norgren, "Effects of Mismatch Positions in Probes on Oligonucleotide DNA Microarrays," A poster presentation at 5th Annual Nebraska INBRE/BRIN Meeting, Grand Island, NE, August 2006.
- C. Lawson and M. Pauley, "Development of a Web-based FASTA-file Converter," A poster presentation at the 4th Annual Nebraska INBRE/BRIN Meeting, Grand Island, NE, August 2006.
- A. Islam, C. Wendover, D. Bastola, M. Pauley and H. Ali, "Med-IT: Medical Information Tracking", A poster presentation at the 33rd (InfoTec 2006), Lincoln, NE, April 2006.
- C. Lawson,, B. Knipe, R. Potula, Y. Persidsky, G. Kanmogne and M. Pauley, "Development of Small Animal Model for HIV-1-Induced Alveolitis: Implications for Pathogenesis and Novel Treatment Approaches," An oral presentation at the Nebraska Academy of Sciences Meeting, Lincoln, NE, April 2006.
- E. R. Spindel, M. A. Pauley, Y. Jia, C. Gravett, S. L. Thompson, N. F. Boyle, S. R. Ojeda and R. B. Norgren, "Leveraging human genomic information to identify nonhuman primate sequences for expression array development," BMC Genomics, 6, 160 (2005).
- A. Tchourbanov, M. Pauley, D. Quest and H. Ali, "A method of precise mRNA/DNA homology-based gene structure prediction," BMC Bioinformatics, 6, 261 (2005).
- E. Spindel, M. Pauley and R. Norgren, "Leveraging Human Genomic Information to Identify Non-human Primate Sequences for Expression Array Development," A poster presentation at the 4th Annual Nebraska INBRE/BRIN Meeting, Grand Island, NE, August 2006.
- R. Norgren, M. Pauley and E. Spindel, "Construction of a Rhesus Macaque Expression GeneChip: A Targeted Sequence Acquisition Approach," An oral presentation at the Seattle International Conference on Primate Genomics, Seattle, WA, March 2005.
- B. Ghahramani and M. A. Pauley, "Java in High-Performance Environments," IEEE Computer, 36 (9), 109 (2003).
- A. Tchourbanov, D. Quest, H. Ali, M. Pauley and R. Norgren, "A New Approach for Gene Annotation Using Unambiguous Sequence Joining," Proceedings/IEEE Computer Society Bioinformatics Conference, 2, 353 (2003).
- M. A. Pauley, "Automation of Primer Selection in a Large-Scale Microarray Project," An oral presentation at the Diversity of Informatics Conference, Lincoln, NE, April 2002.
- M. A. Pauley, G. V. Dalrymple, Q. Zhu and W.-K. Chu, "Acquisition and Review of Diagnostic Images for Use in Medical Research and Medical Testing Examinations," Proceedings of SPIE, 4311, 333 (2001).
- M. A. Pauley, B. Pitman, G. V. Dalrymple, Q. Zhu, W.-K. Chu, R. Wobig and R. Bunting, "Demonstration of the Feasibility of Using the Internet for Acquisition and Review of Diagnostic Images for Use in Medical Research and for Medical Testing Examinations," Proceedings/IEEE EIT Conference, 1, 203 (2000).
- M. A. Pauley and C. H. Wang, "Hyper-Rayleigh Scattering Measurements at 1907 nm," Review of Scientific Instruments, 70, 1277 (1999).
- M. A. Pauley and C. H. Wang, "Hyper-Rayleigh Scattering Measurements of Nonlinear Optical Chromophores at 1907 nm," Chemical Physics Letters, 280 (5/6), 544 (1997).
- O. K. Song, C. H. Wang and M.A. Pauley, "Dynamic Processes of Optically Induced Orientation of Azo Compounds in Amorphous Polymers below Tg," Macromolecules, 30 (22), 6913 (1997).
- J. N. Woodford, M. A. Pauley and C. H. Wang, "Solvent Dependence of the First Molecular Hyperpolarizability of p-Nitroaniline Revisited," Journal of Physical Chemistry A, 101 (11), 1989 (1997).
- M. A. Pauley and C. H. Wang, "Poling Dynamics and Effects of Trapped Charges on Orientational Relaxation of Nonlinear Optical Chromophores in Amorphous Polymers," A poster presentation at the National Meeting of the American Chemical Society, Orlando, FL, August 1996.
- M. A. Pauley, H. W. Guan, C. H. Wang and Alex K.-Y. Jen, "Determination of First Hyperpolarizability of Nonlinear Optical Chromophores by Second Harmonic Scattering using an External Standard," An oral presentation at the National Meeting of the American Physical Society, St. Louis, MO, March 1996.
- M. A. Pauley, C. H. Wang and Alex K.-Y. Jen, "Poling Dynamics and Effects of Trapped Charge in Poled Polymer Films for Nonlinear Optical Applications," Macromolecules, 29 (22), 7064 (1996).
- O. K. Song, M. A. Pauley and C. H. Wang, "Surface Enhanced Raman Spectroscopic Studies of Tricyanovinylthiophene in Silver Colloid Solution," Journal of Raman Spectroscopy, 27 (9), 685 (1996).
- M. A. Pauley, H. W. Guan and C. H. Wang, "Poling Dynamics and Investigation into the Behavior of Trapped Charges in Poled Polymer Films for Nonlinear Optical Applications," Journal of Chemical Physics, 104 (17), 6834 (1996).
- M. A. Pauley, H. W. Guan and C. H. Wang, "Determination of First Hyperpolarizability of Nonlinear Optical Chromophores by Second Harmonic Scattering using an External Standard," Journal of Chemical Physics, 104 (20), 7821 (1996).
- M. A. Pauley and C. H. Wang, "Hyper-Rayleigh Scattering Studies of First Order Hyperpolarizability of Tricyanovinylthiophene Derivatives in Solution," Journal of Chemical Physics, 102 (16), 6400 (1995).
- H. W. Guan, M. A. Pauley, T. Brett and C. H. Wang, "Investigation of Dipolar Reorientation Dynamics of Pure Bulk Polymers Using Second Harmonic Generation," Journal of Polymer Science, Part B., Polymer Physics, 32, 2615 (1994).
Other Publications - top
- Deitel & Assoiciates, Inc., Mark A. Pauley and Daniel Quest, Laboratory Manual to Accompany C++ How to Program, 2nd Edition, Pearson Custom Publishing, Boston (2002) (ISBN 0-536-66753-5).
- Deitel & Assoiciates, Inc., Mark A. Pauley and Daniel Quest, Laboratory Manual to Accompany C++ How to Program, Pearson Custom Publishing, Boston (2000) (ISBN 0-536-62095-4).
Book Reviews - top
- Herbert Schildt. C++: A Beginner's Guide, 2nd Edition. New York: McGraw-Hill, 2003.
- A Building Approach to C++ and Object Oriented Programming. New York: McGraw-Hill
- C. Thomas Wu. An Introduction to Object-Oriented Programming with Java, 4th Edition. New York: McGraw-Hill, 2005.
- Robert Sedgewick and Kevin Wayne. Introduction to Programming (in Java), Boston: Addison-Wesley, 2007.
Grant Activity: - top
| Bioinformatics Mini-Course (active) |
| Description: |
A mini-grant through the University of Nebraska at Omaha's Science, Technology, Engineering, and Mathematics Talent Expansion Program (STEP) grant |
| Project goal(s): |
To develop a short (one- to four-hour) mini-course that would provide a hands-on introduction to the field of bioinformatics. The course would be used as a recruiting tool for the bioinformatics program. |
| Grant Number: |
N/A (internal) |
| Role: |
Principle Investigator |
| Budget: |
$2,500 |
| Period covered: |
2006 - 2007 |
| Nebraska Research Network in Functional Genomics - Renewal (active) |
| Description: |
University of Nebraska Medical Center/National Institutes of Health |
| Project goal(s):
| Enhance the competitiveness of biomedical research in Nebraska by developing the
human and technological resources essential for research in functional genomics (overall goal).
Develop a gene-based annotation database, to integrate primer selection into the database and
to provide an updated high-throughput primer selection program in the public domain. |
| Grant Number:
| P20 RR 16469-04 |
| Role:
| Investigator (subcontract) (Grant PI: James Turpen, University of Nebraska Medical Center) |
| Budget:
| $1,057,500 (subcontract) |
| Period covered:
| 2004 - 2009 |
| UNO and MCC STEPping Together (active) |
| Description: |
National Science Foundation, Division of Undergraduate Education |
| Project goal(s):
| Increase associate and bachelors degrees in the STEM areas of biology, chemistry, computer
science, geology, mathematics and physics in the state of Nebraska. |
| Grant Number:
| DUE-0336462 |
| Role:
| Investigator (Grant PI: Jack Heidel, University of Nebraska at Omaha). |
| Budget:
| $1,999,348 |
| Period covered:
| 2004 - 2009 |
| Construction of a Targeted Rhesus Macaque Microarray |
| Description: |
UNMC/National Institutes of Health |
| Project goal(s):
| Develop a microarray GeneChip™ for the rhesus macaque monkey. |
| Grant Number:
| R24 RR017444 |
| Role:
| Investigator (subcontract) (Grant PI: Robert Norgren, University of Nebraska Medical Center) |
| Budget:
| $411,713 (subcontract |
| Period covered:
| 2003 - 2006 |
| Nebraska Training Network in Functional Genomics - Supplement |
| Description: |
UNMC/National Institutes of Health |
| Project goal(s):
| Increase the competitiveness of the state of Nebraska in the area of biomedical research. |
| Grant Number:
| P20 RR 16469 |
| Role:
| Investigator (subcontract) (Grant PI: James Turpen, University of Nebraska Medical Center) |
| Budget:
| $199,923 (subcontract) |
| Period covered:
| 2003 - 2004 |
| Development of Website to Support New NHS Cardiac Catherization Laboratory |
| Description: |
University of Nebraska Medical Center |
| Project goal(s):
| Development a website to support the (new) Cardiac Catherization Laboratory at Nebraska
Health Systems |
| Grant Number:
| N/A (internal) |
| Role:
| Investigator (Grant PI: Quiming Zhu, University of Nebraska at Omaha) |
| Budget:
| $37,571 |
| Period covered:
| 2000 - 2001 |
| Pilot Project to Demonstrate the Feasibility of Using the Internet for Acquisition and Review of Diagnostic Images for American Board of Radiology Examination Item Pools |
| Description: |
American Board of Radiology |
| Project goal(s):
| Develop a system to allow students to take the American Board of Radiology exam |
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